Publication
2019
MacKenzie KD, Wang Y, Musicha P, Hansen EG, Palmer MB, Herman DJ, Feasey NA, White AP. Parallel evolution leading to impaired biofilm formation in invasive Salmonella strains. PLoS Genet. 2019 Jun 24;15(6):e1008233. doi: 10.1371/journal.pgen.1008233. Pubmed
Yu J, Hu Y, Xu Y, Wang J, Kuang J, Zhang W, Shao J, Guo D, Wang Y. LUADpp: an effective prediction model on prognosis of lung adenocarcinomas based on somatic mutational features. BMC Cancer. 2019 Mar 22;19(1):263. doi: 10.1186/s12885-019-5433-7. Pubmed
2018
Wang Y, Chen X, Hu Y, Zhu G, White AP, Köster W. The Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia. Infect Immun. 2018 Aug 27; pii: IAI.00573-18. doi: 10.1128/IAI.00573-18. Pubmed
Zhong Q, Fang J, Huang Z, Yang Y, Lian M, Liu H, Zhang Y, Ye J, Hui X, Wang Y, Ying Y, Zhang Q, Cheng Y. A response prediction model for taxane, cisplatin, and 5-fluorouracil chemotherapy in hypopharyngeal carcinoma. Sci Rep. 2018 Aug 23; 8(1):12675. doi: 10.1038/s41598-018-31027-y. Pubmed
Ou BM, Garcia C, Wang Y, Zhang WP, Zhu GQ. Techniques for chromosomal integration and expression optimization in Escherichia coli. Biotechnol Bioeng. 2018 Jul 4; doi: 10.1002/bit.26790. Pubmed
Zhou L, Hui X, Yuan H, Liu Y, Wang Y. Combination of Genetic Markers and Age Effectively Facilitates the Identification of People with High Risk of Preeclampsia in the Han Chinese Population. BioMed Research International. 2018 Jun 11; Volume 2018, Article ID 4808046. Link
Wang Y, Sun MA (Eds). Transcriptome Data Analysis: Methods and Protocols. Methods in Molecular Biology Vol. 1751, Springer, Humana Press, 2018. ISSN: 1064-3745. DOI: 10.1007/978-1-4939-7710-9. Link
2017
Shu XS, Zhao Y, Sun Y, Zhong L, Cheng Y, Zhang Y, Ning K, Tao Q, Wang Y, Ying Y. PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer. Journal of Pathology. 2017 Sep 12; 244(1):36-48. Pubmed
Zhang S, Xu Y, Hui X, Yang F, Hu Y, Shao J, Liang H, Wang Y. Improvement in prediction of prostate cancer prognosis with somatic mutational signatures. Journal of Cancer. 2017 Aug 29. 8(16):3261-3267. Pubmed
Guo Z, Cheng X, Hui X, Shu X, White AP, Hu Y, Wang Y. Prediction of new bacterial type III secreted effectors with a recursive Hidden Markov Model profile-alignment strategy. Current Bioinformatics. 2017 Jul 24. Link
Zhang Q, Fan X, Wang Y, Sun M, Shao J, Guo D. BPP: a sequence-based algorithm for branch point prediction. Bioinformatics. 2017 Jun 19; 33(20):3166-3172. Pubmed
Hui X, Hu Y, Sun MA, Shu X, Han R, Ge Q, Wang Y. EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons. Bioinformatics. 2017 May 3; 33(17):2631-2641. Pubmed
Hu Y, Huang H, Cheng X, Shu X, White AP, Stavrinides J, Koster W, Zhu G, Zhao Z, Wang Y. A global survey of bacterial type III secretion systems and their effectors. Environ Microbiol. 2017 Apr 12; 19(10):3879-3895. Pubmed
Sun MA, Wang Y, Zhang Q, Xia Y, Ge W, Guo D. Prediction of reversible disulfide based on features from local structural signatures. BMC Genomics. 2017 Apr 4; 18(1):279. doi: 10.1186/s12864-017-3668-8. Pubmed
Wang J, Wang Y, Gao C, Jiang L, Guo D. PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction. PLoS ONE. 2017 Jan 3; 12(1):e0168912. doi: 10.1371/journal.pone.0168912. Pubmed
2016
Han R, Huang G, Wang Y, Xu Y, Hu Y, Jiang W, Wang T, Xiao T, Zheng D. Increased gene expression noise in human cancers is correlated with low p53 and immune activities as well as late stage cancer. Oncotarget. 2016 Oct 4; doi: 10.18632/oncotarget.12457. Pubmed
Sun MA, Zhang Q, Wang Y, Ge W, Guo D. Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features. BMC Bioinformatics. 2016 Aug 24;17(1):316. Pubmed
Shivak DJ, MacKenzie KD, Watson N, Pasternak A, Jones BD, Wang Y, DeVinney R, Wilson H, Surette MG, White AP. A modular, Tn7-based system for making bioluminescent or fluorescent Salmonella and E. coli strains. Appl Environ Microbiol. 2016 Jul 29;82(16):4931-43. Pubmed
Zhou L, Cheng L, He Y, Gu Y, Wang Y, Wang C. Association of gene polymorphisms of FV, FII, MTHFR, SERPINE1, CTLA4, IL10, and TNFalpha with pre-eclampsia in Chinese women. Inflamm Res. 2016 Sep;65(9):717-24. Pubmed
Hu Y, Huang H, Hui X, Cheng X, White AP, Zhao Z*, Wang Y*. Distribution and Evolution of Yersinia Leucine-Rich Repeat Proteins. Infect Immun. 2016 Jul 21;84(8):2243-54. Pubmed